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  5. Solyc06g083070.3.1

Solyc06g083070.3.1 (Solyc06g083070)


Aliases : Solyc06g083070

Description : fimbrin actin-crosslinking factor


Gene families : OG0001639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083070.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00167620 evm_27.TU.AmTr_v1... Cytoskeleton.microfilament network.actin... 0.03 OrthoFinder output from all 47 species
AMTR_s00055p00193060 FIM5, FIM2,... Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
Aev_g13168 No alias fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s1991.g108572 FIM5, FIM2 fimbrin actin-crosslinking factor & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000219.74 No alias Fimbrin-5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dde_g13682 FIM5, FIM2 fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030417001 FIM5, FIM2 Cytoskeleton.microfilament network.actin... 0.07 OrthoFinder output from all 47 species
LOC_Os01g33080.1 LOC_Os01g33080 fimbrin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
Lfl_g02024 No alias fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo423931 FIM5, FIM2 Cytoskeleton.microfilament network.actin... 0.02 OrthoFinder output from all 47 species
Solyc07g049600.4.1 FIM5, FIM2,... fimbrin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
Tin_g04688 FIM5, FIM2 fimbrin acTin-crosslinking factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR001715 CH_dom 146 237
IPR001715 CH_dom 269 370
IPR001715 CH_dom 517 620
IPR001715 CH_dom 395 497
No external refs found!