Solyc06g082660.4.1 (RPT3, Solyc06g082660)

Aliases : RPT3, Solyc06g082660

Description : regulatory component RPT3 of 26S proteasome

Gene families : OG0002973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002973_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g082660.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00161980	RPT3,...	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
AT5G58290	RPT3	regulatory particle triple-A ATPase 3	0.03	OrthoFinder output from all 47 species
Adi_g077047	RPT3	regulatory component *(RPT3) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Cre09.g402450	RPT3	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
LOC_Os02g21970.1	RPT3, LOC_Os02g21970	regulatory component RPT3 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Mp8g10830.1	RPT3	regulatory component RPT3 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Pnu_g12682	RPT3	regulatory component *(RPT3) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Spa_g04802	RPT3	regulatory component *(RPT3) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	354	396
IPR032501	Prot_ATP_ID_OB_C	85	140
IPR003959	ATPase_AAA_core	198	331

External Links

No external refs found!