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  5. Solyc06g076340.3.1

Solyc06g076340.3.1 (APUM2, PUM2, Solyc06g076340)


Aliases : APUM2, PUM2, Solyc06g076340

Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 957.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g076340.3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Adi_g010436 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10258 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2326.g110592 PUM1, APUM1 not classified & original description: CDS=3742-4032 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01024919001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01031557001 APUM6, PUM6 Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_28529 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g62650.1 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g08945 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10215 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434828g0010 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_42218g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Pnu_g09055 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006119 No alias phospholipase-A1 *(PC-PLA1) & original description: CDS=1-4779 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0136.g022409 APUM2, PUM2 not classified & original description: CDS=679-3840 0.02 OrthoFinder output from all 47 species
Sam_g15647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g25298 PUM3, APUM3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021916_P002 APUM6, PUM6,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 286 337
IPR012940 NABP 337 657
IPR001313 Pumilio_RNA-bd_rpt 731 760
IPR001313 Pumilio_RNA-bd_rpt 876 908
IPR001313 Pumilio_RNA-bd_rpt 803 830
IPR001313 Pumilio_RNA-bd_rpt 694 724
IPR001313 Pumilio_RNA-bd_rpt 769 799
IPR001313 Pumilio_RNA-bd_rpt 925 951
IPR001313 Pumilio_RNA-bd_rpt 840 870
IPR001313 Pumilio_RNA-bd_rpt 659 691
No external refs found!