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  5. Solyc06g076280.3.1

Solyc06g076280.3.1 (ATGRAS2, SCL14,...)


Aliases : ATGRAS2, SCL14, GRAS2, Solyc06g076280

Description : transcription factor (GRAS)


Gene families : OG0000181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g076280.3.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
Aop_g21717 No alias GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g43069 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g52700 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37658.t1 ATGRAS2, SCL14,... GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0304.g063850 No alias GRAS-type transcription factor & original description: CDS=1-2073 0.05 OrthoFinder output from all 47 species
Cba_g72741 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G022300.1 Ceric.31G022300 GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g43951 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g13346 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31430 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024932001 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
GSVIVT01024935001 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
GSVIVT01034155001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.06 OrthoFinder output from all 47 species
Gb_21856 No alias transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Gb_29764 No alias transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
LOC_Os11g47900.1 LOC_Os11g47900 transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Msp_g11143 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g29738 No alias GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g40509 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12530 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g31331 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g05662 No alias GRAS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g28846 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46633 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009546 No alias GRAS-type transcription factor & original description: CDS=1-2640 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020509 No alias GRAS-type transcription factor & original description: CDS=1-1197 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023672 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: CDS=1-1506 0.02 OrthoFinder output from all 47 species
Smo232175 ATGRAS2, SCL14, GRAS2 RNA biosynthesis.transcriptional activation.GRAS... 0.04 OrthoFinder output from all 47 species
Spa_g22215 ATGRAS2, SCL14, GRAS2 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30079 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48236 No alias GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53562 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e002973_P001 Zm00001e002973 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Zm00001e006195_P001 ATGRAS2, SCL14,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e020943_P001 Zm00001e020943 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006570 tyrosine metabolic process IEP HCCA
BP GO:0006571 tyrosine biosynthetic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 374 745
No external refs found!