Solyc06g075150.3.1 (ARF16, Solyc06g075150)


Aliases : ARF16, Solyc06g075150

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g075150.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00215020 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.02 OrthoFinder output from all 47 species
Adi_g011925 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g084657 ARF19, IAA22, ARF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32218 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010141 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-2961 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013413 ARF10 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g08665 ARF16 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g01740 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09257 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g11966 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18587 ARF16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26859 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g27900 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30682 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_25507 ARF16 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_31132 ARF4 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Gb_39685 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os12g41950.1 ARF6, LOC_Os12g41950 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Len_g12892 ARF6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17368 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g24419 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_67394g0010 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Nbi_g13614 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25925 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740 TIR5, MSG1,... ARF-type transcription factor & original description: CDS=1-2400 0.04 OrthoFinder output from all 47 species
Sam_g04406 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g16405 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19673 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51872 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo424113 ARF6 Auxin response factor 6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo438333 TIR5, MSG1,... Auxin response factor 11 OS=Oryza sativa subsp. indica 0.04 OrthoFinder output from all 47 species
Solyc01g103050.3.1 ARF1, Solyc01g103050 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc05g056040.3.1 ARF11, Solyc05g056040 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e004554_P002 ARF16, Zm00001e004554 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013639_P001 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 ARF_dom 263 345
IPR003340 B3_DNA-bd 103 203
No external refs found!