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  5. Solyc06g074720.4.1

Solyc06g074720.4.1 (Solyc06g074720)


Aliases : Solyc06g074720

Description : pre-60S ribosomal subunit assembly factor (NOP15)


Gene families : OG0005172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g074720.4.1

Target Alias Description ECC score Gene Family Method Actions
AT5G04600 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g023728 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.03 OrthoFinder output from all 47 species
Als_g04747 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038170 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.04 OrthoFinder output from all 47 species
Dac_g13309 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
LOC_Os08g31810.3 LOC_Os08g31810 pre-60S ribosomal subunit assembly factor (NOP15) 0.06 OrthoFinder output from all 47 species
Msp_g00441 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 58 124
No external refs found!