1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g072830.4.1

Solyc06g072830.4.1 (CDC20.1, Solyc06g072830)


Aliases : CDC20.1, Solyc06g072830

Description : CDC20-type (APC/C)-dependent ubiquitination activator protein


Gene families : OG0001302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001302_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g072830.4.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00114780 CDC20.2,... Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.03 OrthoFinder output from all 47 species
AT4G33260 CDC20.2 Transducin family protein / WD-40 repeat family protein 0.06 OrthoFinder output from all 47 species
AT4G33270 CDC20.1 Transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Ala_g19409 CDC20.2 substrate specificity component *(CDC20) of APC/C E3... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35395.t1 CDC20.2, Aspi01Gene35395 substrate specificity component *(CDC20) of APC/C E3... 0.04 OrthoFinder output from all 47 species
Cre09.g399911 CDC20.2 Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.04 OrthoFinder output from all 47 species
LOC_Os04g51110.1 CDC20.1, LOC_Os04g51110 CDC20-type (APC/C)-dependent ubiquitination activator protein 0.09 OrthoFinder output from all 47 species
Mp3g00030.1 CDC20.2 CDC20-type (APC/C)-dependent ubiquitination activator protein 0.1 OrthoFinder output from all 47 species
Zm00001e023310_P002 CDC20.2, Zm00001e023310 CDC20-type (APC/C)-dependent ubiquitination activator protein 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048478 replication fork protection IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 306 344
IPR001680 WD40_repeat 259 293
IPR001680 WD40_repeat 395 429
IPR024977 Apc4_WD40_dom 177 234
No external refs found!