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  5. Solyc06g072320.4.1

Solyc06g072320.4.1 (LCB2, Solyc06g072320)


Aliases : LCB2, Solyc06g072320

Description : catalytic subunit 2 of serine C-palmitoyltransferase complex


Gene families : OG0003878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g072320.4.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT3G48780 SPT1, ATSPT1 serine palmitoyltransferase 1 0.02 OrthoFinder output from all 47 species
AT5G23670 LCB2 long chain base2 0.06 OrthoFinder output from all 47 species
Azfi_s0032.g024795 LCB2 EC_2.3 acyltransferase & original description: CDS=1-1695 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000025.27 LCB2 Lipid metabolism.sphingolipid metabolism.serine... 0.03 OrthoFinder output from all 47 species
Cre04.g230144 LCB2 Lipid metabolism.sphingolipid metabolism.serine... 0.03 OrthoFinder output from all 47 species
GSVIVT01008621001 LCB2 Lipid metabolism.sphingolipid metabolism.serine... 0.04 OrthoFinder output from all 47 species
GSVIVT01033008001 LCB2 Lipid metabolism.sphingolipid metabolism.serine... 0.03 OrthoFinder output from all 47 species
Gb_24136 LCB2 catalytic subunit 2 of serine C-palmitoyltransferase complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g70380.1 LCB2, LOC_Os01g70380 catalytic subunit 2 of serine C-palmitoyltransferase complex 0.03 OrthoFinder output from all 47 species
Pir_g11255 LCB2 EC_2.3 acyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g01279 LCB2 EC_2.3 acyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g098220.4.1 SPT1, ATSPT1,... catalytic subunit 2 of serine C-palmitoyltransferase complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004839 Aminotransferase_I/II 102 460
No external refs found!