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  5. Solyc06g072300.4.1

Solyc06g072300.4.1 (AGO1, Solyc06g072300)


Aliases : AGO1, Solyc06g072300

Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g072300.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 AGO4, OCP11,... Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00049370 AGO1,... Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
AMTR_s00058p00069070 AGO7, ZIP,... Chromatin organisation.DNA methylation.canonical... 0.05 OrthoFinder output from all 47 species
AT2G27040 AGO4, OCP11 Argonaute family protein 0.04 OrthoFinder output from all 47 species
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.06 OrthoFinder output from all 47 species
Ala_g35634 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11793 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17789 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58865 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.06 OrthoFinder output from all 47 species
Aob_g11029 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Aop_g05330 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Aspi01Gene71412.t1 AGO9, Aspi01Gene71412 siRNA-integrating factor *(AGO) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G056900.1 AGO1, Ceric.28G056900 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.05 OrthoFinder output from all 47 species
Dcu_g16554 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Ehy_g18181 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.06 OrthoFinder output from all 47 species
Gb_34642 PNH, AGO10, ZLL RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Gb_34718 PNH, AGO10, ZLL Protein argonaute 10 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g58490.1 AGO1, LOC_Os02g58490 RIS-Complex miRNA recruiting factor (AGO1) 0.08 OrthoFinder output from all 47 species
LOC_Os04g06770.2 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
LOC_Os04g47870.1 AGO1, LOC_Os04g47870 RIS-Complex miRNA recruiting factor (AGO1) 0.04 OrthoFinder output from all 47 species
LOC_Os06g39640.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.06 OrthoFinder output from all 47 species
Len_g08893 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Lfl_g06710 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
MA_118377g0010 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.04 OrthoFinder output from all 47 species
Mp1g18110.1 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Msp_g14613 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g21068 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.05 OrthoFinder output from all 47 species
Nbi_g07722 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.05 OrthoFinder output from all 47 species
Nbi_g40097 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05462 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Ore_g19058 PNH, AGO10, ZLL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66376 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Pp3c17_350V3.1 AGO1, Pp3c17_350 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.01 OrthoFinder output from all 47 species
Sam_g25176 No alias siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09278 AGO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12263 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54963 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007233_P001 AGO1, Zm00001e007233 RIS-Complex miRNA recruiting factor (AGO1) 0.01 OrthoFinder output from all 47 species
Zm00001e029696_P001 AGO1, Zm00001e029696 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Zm00001e037347_P002 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
InterPro domains Description Start Stop
IPR032472 ArgoL2 530 576
IPR024357 Argonaut_Gly-rich 70 174
IPR014811 ArgoL1 338 387
IPR003100 PAZ_dom 394 519
IPR032473 Argonaute_Mid_dom 587 661
IPR003165 Piwi 681 1000
IPR032474 Argonaute_N 194 328
No external refs found!