Solyc06g071870.3.1 (Solyc06g071870)

Aliases : Solyc06g071870

Description : component RPL17 of LSU proteome component

Gene families : OG0001495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g071870.3.1
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00159640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
AMTR_s00013p00211990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
AMTR_s00013p00224030	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
AT1G27400	No alias	Ribosomal protein L22p/L17e family protein	0.36	OrthoFinder output from all 47 species
AT1G67430	No alias	Ribosomal protein L22p/L17e family protein	0.25	OrthoFinder output from all 47 species
Adi_g041566	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aev_g23375	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ala_g23480	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g34478	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Als_g39728	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g07938	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g49076	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Aspi01Gene27569.t1	Aspi01Gene27569	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0243.g059889	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Azfi_s0467.g072815	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0599.g078872	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Azfi_s2109.g109388	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s2217.g109896	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Cba_g12448	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.02G040500.1	Ceric.02G040500	component *(uL22) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Ceric.36G028400.1	Ceric.36G028400	component *(uL22) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001215.8	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Cre13.g568900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.38	OrthoFinder output from all 47 species
Dac_g15760	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dac_g23579	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Dcu_g11860	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g32685	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Dcu_g43058	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dde_g10623	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01008528001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	OrthoFinder output from all 47 species
GSVIVT01010449001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
GSVIVT01010450001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	OrthoFinder output from all 47 species
Gb_19047	No alias	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os08g41810.1	LOC_Os08g41810	component RPL17 of LSU proteome component	0.18	OrthoFinder output from all 47 species
LOC_Os09g08430.1	LOC_Os09g08430	component RPL17 of LSU proteome component	0.28	OrthoFinder output from all 47 species
Len_g18743	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Len_g59449	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g00640	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g31086	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_10430182g0010	No alias	component RPL17 of LSU proteome component	0.2	OrthoFinder output from all 47 species
MA_64923g0010	No alias	component RPL17 of LSU proteome component	0.25	OrthoFinder output from all 47 species
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.36	OrthoFinder output from all 47 species
Msp_g00316	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g03330	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g27595	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Ore_g02901	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ore_g07962	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g05366	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g39286	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g58342	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_5840V3.1	Pp3c11_5840	Ribosomal protein L22p/L17e family protein	0.18	OrthoFinder output from all 47 species
Pp3c1_6650V3.1	Pp3c1_6650	Ribosomal protein L22p/L17e family protein	0.1	OrthoFinder output from all 47 species
Ppi_g07930	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g26817	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g27245	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g37392	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g48391	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021928	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g00835	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g15137	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.34	OrthoFinder output from all 47 species
Sam_g44519	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo96251	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Spa_g12589	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g15052	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Spa_g51098	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Tin_g04902	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Tin_g05389	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e003661_P001	Zm00001e003661	component RPL17 of LSU proteome component	0.4	OrthoFinder output from all 47 species
Zm00001e005470_P001	Zm00001e005470	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e021953_P003	Zm00001e021953	component RPL17 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Zm00001e026882_P002	Zm00001e026882	component RPL17 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Zm00001e031261_P001	Zm00001e031261	component RPL17 of LSU proteome component	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	17	152

External Links

No external refs found!

Solyc06g071870.3.1 (Solyc06g071870)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation