Solyc06g069480.3.1 (Solyc06g069480)

Aliases : Solyc06g069480

Description : DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana (sp|q9fnq1|dexhe_arath : 3347.0)

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g069480.3.1
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00146400	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH14...	0.07	OrthoFinder output from all 47 species
AT5G61140	No alias	U5 small nuclear ribonucleoprotein helicase	0.06	OrthoFinder output from all 47 species
Adi_g085426	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g117139	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g29910	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g04355	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g14557	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09018	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene33378.t1	Aspi01Gene33378	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0068.g036403	No alias	RNA helicase *(Brr2) & original description: CDS=166-5640	0.03	OrthoFinder output from all 47 species
Ceric.1Z134800.1	Ceric.1Z134800	not classified & original description: pacid=50597112...	0.04	OrthoFinder output from all 47 species
Ceric.1Z263400.1	Ceric.1Z263400	RNA helicase *(Brr2) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000865.27	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.01	OrthoFinder output from all 47 species
Dcu_g12406	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g03005	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007875001	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.07	OrthoFinder output from all 47 species
Gb_18049	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
Gb_27895	emb1507	RNA helicase (Brr2)	0.03	OrthoFinder output from all 47 species
LOC_Os03g11470.1	LOC_Os03g11470	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
Lfl_g09106	No alias	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
MA_10429486g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_10434882g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
MA_10434991g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_8113344g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.07	OrthoFinder output from all 47 species
MA_81219g0020	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.06	OrthoFinder output from all 47 species
MA_823844g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.04	OrthoFinder output from all 47 species
MA_930633g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.09	OrthoFinder output from all 47 species
Nbi_g16836	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g09250	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007145	No alias	RNA helicase *(Brr2) & original description: CDS=159-5693	0.04	OrthoFinder output from all 47 species
Sam_g36113	No alias	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
Smo144158	emb1507	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Zm00001e038727_P001	Zm00001e038727	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004179	Sec63-dom	1773	2084
IPR004179	Sec63-dom	942	1248
IPR001650	Helicase_C	1569	1655
IPR001650	Helicase_C	670	819
IPR011545	DEAD/DEAH_box_helicase_dom	444	617
IPR011545	DEAD/DEAH_box_helicase_dom	1292	1456

External Links

No external refs found!

Solyc06g069480.3.1 (Solyc06g069480)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation