Solyc06g069230.3.1 (ATMSH2, MSH2, Solyc06g069230)

Aliases : ATMSH2, MSH2, Solyc06g069230

Description : component MSH2 of MSH2-x mismatch repair heterodimers

Gene families : OG0004193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g069230.3.1
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00236950	ATMSH2, MSH2,...	DNA damage response.DNA repair mechanisms.mismatch...	0.1	OrthoFinder output from all 47 species
AT3G18524	ATMSH2, MSH2	MUTS homolog 2	0.08	OrthoFinder output from all 47 species
Ceric.01G010000.1	ATMSH2, MSH2,...	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001224.8	ATMSH2, MSH2	DNA damage response.DNA repair mechanisms.mismatch...	0.04	OrthoFinder output from all 47 species
Cre01.g003463	ATMSH2, MSH2	DNA mismatch repair protein MSH2 OS=Zea mays	0.03	OrthoFinder output from all 47 species
Dac_g10467	ATMSH2, MSH2	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Dcu_g04076	ATMSH2, MSH2	component *(MSH2) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
LOC_Os05g19270.1	ATMSH2, MSH2,...	component MSH2 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species
MA_10431416g0010	ATMSH2, MSH2	DNA mismatch repair protein MSH2 OS=Zea mays...	0.09	OrthoFinder output from all 47 species
MA_59360g0010	ATMSH2, MSH2	component MSH2 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species
MA_60574g0010	No alias	DNA mismatch repair protein MSH2 OS=Zea mays...	0.03	OrthoFinder output from all 47 species
Mp4g08420.1	ATMSH2, MSH2	component MSH2 of MSH2-x mismatch repair heterodimers	0.07	OrthoFinder output from all 47 species
Zm00001e035455_P001	ATMSH2, MSH2,...	component MSH2 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007861	DNA_mismatch_repair_MutS_clamp	469	565
IPR007695	DNA_mismatch_repair_MutS-lik_N	23	128
IPR007696	DNA_mismatch_repair_MutS_core	299	606
IPR000432	DNA_mismatch_repair_MutS_C	662	859
IPR007860	DNA_mmatch_repair_MutS_con_dom	143	283

External Links

No external refs found!

Solyc06g069230.3.1 (ATMSH2, MSH2, Solyc06g069230)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation