Solyc06g068280.3.1 (Solyc06g068280)

Aliases : Solyc06g068280

Description : DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana (sp|q9lu46|rh35_arath : 973.0)

Gene families : OG0005520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005520_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g068280.3.1
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00113470	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Ala_g10950	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0002.g001173	No alias	not classified & original description: CDS=1-2220	0.03	OrthoFinder output from all 47 species
Cre07.g334200	No alias	DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g11073	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g09581	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	553	569
IPR001650	Helicase_C	389	496
IPR011545	DEAD/DEAH_box_helicase_dom	174	353

External Links

No external refs found!