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  5. Solyc06g068210.3.1

Solyc06g068210.3.1 (FRS8, Solyc06g068210)


Aliases : FRS8, Solyc06g068210

Description : transcription factor (FAR1)


Gene families : OG0002906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g068210.3.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017368001 FRS6 RNA biosynthesis.transcriptional activation.FAR1... 0.04 OrthoFinder output from all 47 species
LOC_Os03g45300.1 FRS5, LOC_Os03g45300 transcription factor (FAR1) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50900.1 FRS5, LOC_Os03g50900 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g40060.1 FRS6, LOC_Os04g40060 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os07g37630.1 FRS7, LOC_Os07g37630 transcription factor (FAR1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 631 657
IPR018289 MULE_transposase_dom 337 423
IPR004330 FAR1_DNA_bnd_dom 134 217
No external refs found!