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  5. Solyc06g065980.3.1

Solyc06g065980.3.1 (Solyc06g065980)


Aliases : Solyc06g065980

Description : R-loop reader protein (ALBA1/2)


Gene families : OG0001187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g065980.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G29250 No alias Alba DNA/RNA-binding protein 0.03 OrthoFinder output from all 47 species
Adi_g051544 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g080249 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g00666 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.54 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01017289001 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01035831001 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os06g40040.1 LOC_Os06g40040 R-loop reader protein (ALBA1/2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 20 82
No external refs found!