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  5. Solyc06g065470.4.1

Solyc06g065470.4.1 (Y14, Solyc06g065470)


Aliases : Y14, Solyc06g065470

Description : component Y14 of RNA quality control Exon Junction complex


Gene families : OG0003013 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g065470.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 OrthoFinder output from all 47 species
Adi_g008368 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Adi_g008369 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g49049 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g01014 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030862 Y14 component *(Y14) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Cba_g05693 Y14 component *(Y14) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Cba_g59522 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021352.5 Y14 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Cre12.g526750 Y14 RNA processing.RNA quality control Exon Junction complex... 0.05 OrthoFinder output from all 47 species
Dac_g11017 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Lfl_g01390 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pp3c7_3000V3.1 Y14, Pp3c7_3000 RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Ppi_g19609 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Spa_g44056 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Tin_g04336 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 93 163
No external refs found!