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  5. Solyc06g053800.3.1

Solyc06g053800.3.1 (Solyc06g053800)


Aliases : Solyc06g053800

Description : pre-60S subunit nuclear export factor (NMD3)


Gene families : OG0004348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004348_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc06g053800.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g087238 No alias pre-60S ribosomal-subunit proteome nuclear export factor... 0.03 OrthoFinder output from all 47 species
Adi_g113237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06806 No alias pre-60S ribosomal-subunit proteome nuclear export factor... 0.03 OrthoFinder output from all 47 species
Ppi_g17783 No alias pre-60S ribosomal-subunit proteome nuclear export factor... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR007064 Nmd3_N 13 242
No external refs found!