Solyc06g051980.4.1 (Solyc06g051980)


Aliases : Solyc06g051980

Description : SINA-class E3 ligase


Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g051980.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00116p00101320 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Dde_g50728 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03618 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025381001 SINAT2 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os01g13370.1 LOC_Os01g13370 SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008068 No alias E3 ubiquitin ligase *(SINA) & original description: CDS=51-977 0.03 OrthoFinder output from all 47 species
Spa_g26593 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0007275 multicellular organism development IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 98 297
No external refs found!