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  5. Solyc06g048943.1.1

Solyc06g048943.1.1 (CRK8, Solyc06g048943)


Aliases : CRK8, Solyc06g048943

Description : Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana (sp|q9zt94|polr2_arath : 171.0)


Gene families : OG0000741 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000741_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g048943.1.1
Cluster HCCA: Cluster_435

Target Alias Description ECC score Gene Family Method Actions
Solyc01g065625.1.1 CRK8, Solyc01g065625 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc01g067045.1.1 CRK8, Solyc01g067045 Retrovirus-related Pol polyprotein from transposon RE1... 0.04 OrthoFinder output from all 47 species
Solyc03g111705.1.1 CRK8, Solyc03g111705 Retrovirus-related Pol polyprotein from transposon RE1... 0.06 OrthoFinder output from all 47 species
Solyc03g150108.1.1 CRK8, Solyc03g150108 Retrovirus-related Pol polyprotein from transposon RE1... 0.04 OrthoFinder output from all 47 species
Solyc09g074575.1.1 CRK8, Solyc09g074575 Retrovirus-related Pol polyprotein from transposon RE2... 0.1 OrthoFinder output from all 47 species
Solyc09g150145.1.1 CRK8, Solyc09g150145 Retrovirus-related Pol polyprotein from transposon RE2... 0.11 OrthoFinder output from all 47 species
Solyc10g048005.1.1 CRK8, Solyc10g048005 Retrovirus-related Pol polyprotein from transposon RE1... 0.06 OrthoFinder output from all 47 species
Solyc10g050517.1.1 Solyc10g050517 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc10g051255.1.1 CRK8, Solyc10g051255 Retrovirus-related Pol polyprotein from transposon RE1... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR013103 RVT_2 4 95
No external refs found!