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  5. Solyc06g048713.1.1

Solyc06g048713.1.1 (CRK8, Solyc06g048713)


Aliases : CRK8, Solyc06g048713

Description : Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana (sp|q9zt94|polr2_arath : 107.0)


Gene families : OG0000741 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000741_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g048713.1.1

Target Alias Description ECC score Gene Family Method Actions
Solyc03g062835.1.1 CRK8, Solyc03g062835 Retrovirus-related Pol polyprotein from transposon RE1... 0.05 OrthoFinder output from all 47 species
Solyc04g150146.1.1 CRK8, Solyc04g150146 Retrovirus-related Pol polyprotein from transposon RE1... 0.04 OrthoFinder output from all 47 species
Solyc05g013617.1.1 CRK8, Solyc05g013617 Retrovirus-related Pol polyprotein from transposon RE1... 0.09 OrthoFinder output from all 47 species
Solyc06g009015.1.1 CRK8, Solyc06g009015 Retrovirus-related Pol polyprotein from transposon RE2... 0.07 OrthoFinder output from all 47 species
Solyc07g019493.1.1 CRK8, Solyc07g019493 Retrovirus-related Pol polyprotein from transposon RE1... 0.1 OrthoFinder output from all 47 species
Solyc08g014612.1.1 CRK8, Solyc08g014612 Retrovirus-related Pol polyprotein from transposon RE1... 0.04 OrthoFinder output from all 47 species
Solyc09g042725.1.1 CRK8, Solyc09g042725 Retrovirus-related Pol polyprotein from transposon RE1... 0.08 OrthoFinder output from all 47 species
Solyc10g038045.1.1 CRK8, Solyc10g038045 Retrovirus-related Pol polyprotein from transposon RE2... 0.03 OrthoFinder output from all 47 species
Solyc12g040642.1.1 CRK8, Solyc12g040642 Retrovirus-related Pol polyprotein from transposon RE2... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!