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  5. Solyc06g048460.2.1

Solyc06g048460.2.1 (EMB2771, Solyc06g048460)


Aliases : EMB2771, Solyc06g048460

Description : component APC1 of (APC/C)-dependent ubiquitination platform subcomplex


Gene families : OG0006432 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006432_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g048460.2.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AT5G05560 EMB2771 E3 ubiquitin ligase, putative 0.06 OrthoFinder output from all 47 species
Adi_g061131 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Ala_g33730 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.04 OrthoFinder output from all 47 species
Cba_g14327 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Ceric.30G071400.1 EMB2771, Ceric.30G071400 component *(APC1) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Cre13.g579100 EMB2771 Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Dcu_g12987 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.04 OrthoFinder output from all 47 species
GSVIVT01032797001 EMB2771 Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.04 OrthoFinder output from all 47 species
Gb_37425 EMB2771 component APC1 of (APC/C)-dependent ubiquitination... 0.09 OrthoFinder output from all 47 species
Lfl_g38762 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.03 OrthoFinder output from all 47 species
Mp4g04020.1 EMB2771 component APC1 of (APC/C)-dependent ubiquitination... 0.05 OrthoFinder output from all 47 species
Nbi_g21518 EMB2771 component *(APC1) of (APC/C)-dependent ubiquitination... 0.03 OrthoFinder output from all 47 species
Zm00001e031482_P002 EMB2771, Zm00001e031482 component APC1 of (APC/C)-dependent ubiquitination... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005680 anaphase-promoting complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
InterPro domains Description Start Stop
IPR041221 APC1_C 1589 1672
IPR024990 Apc1 108 220
No external refs found!