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  5. Solyc06g017970.4.1

Solyc06g017970.4.1 (Solyc06g017970)


Aliases : Solyc06g017970

Description : Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana (sp|q84wu2|ubp13_arath : 90.9)


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g017970.4.1

Target Alias Description ECC score Gene Family Method Actions
AT2G25320 No alias TRAF-like family protein 0.07 OrthoFinder output from all 47 species
Adi_g040071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05545 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g35642 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g16408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G028800.1 Ceric.02G028800 not classified & original description: pacid=50585664... 0.04 OrthoFinder output from all 47 species
Ceric.07G070900.1 Ceric.07G070900 not classified & original description: pacid=50626059... 0.06 OrthoFinder output from all 47 species
Dcu_g12067 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01035878001 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
MA_10434824g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_24634g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_9624g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp8g09710.1 No alias MATH domain and coiled-coil domain-containing protein... 0.03 OrthoFinder output from all 47 species
Ore_g29897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023847 No alias not classified & original description: CDS=1-5244 0.05 OrthoFinder output from all 47 species
Smo173767 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Zm00001e022965_P001 Zm00001e022965 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 85 210
IPR002083 MATH/TRAF_dom 591 698
IPR002083 MATH/TRAF_dom 441 548
No external refs found!