Solyc06g009970.3.1 (Solyc06g009970)


Aliases : Solyc06g009970

Description : aminoacyl-tRNA binding factor (eEF1A)


Gene families : OG0000296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g009970.3.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00072310 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1A... 0.06 OrthoFinder output from all 47 species
AT1G07920 No alias GTP binding Elongation factor Tu family protein 0.22 OrthoFinder output from all 47 species
AT1G07930 No alias GTP binding Elongation factor Tu family protein 0.23 OrthoFinder output from all 47 species
AT1G07940 No alias GTP binding Elongation factor Tu family protein 0.23 OrthoFinder output from all 47 species
AT5G60390 No alias GTP binding Elongation factor Tu family protein 0.04 OrthoFinder output from all 47 species
Aev_g06624 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Ala_g10935 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Als_g11645 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Als_g26660 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Als_g31007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09508 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Cba_g08954 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Ceric.09G081400.1 Ceric.09G081400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Ceric.11G084400.1 Ceric.11G084400 aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g10803 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os03g08010.1 LOC_Os03g08010 aminoacyl-tRNA binding factor (eEF1A) 0.03 OrthoFinder output from all 47 species
LOC_Os03g08020.1 LOC_Os03g08020 aminoacyl-tRNA binding factor (eEF1A) 0.02 OrthoFinder output from all 47 species
LOC_Os03g08050.1 LOC_Os03g08050 aminoacyl-tRNA binding factor (eEF1A) 0.03 OrthoFinder output from all 47 species
Len_g26553 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g07927 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g17369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22816 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.02 OrthoFinder output from all 47 species
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 OrthoFinder output from all 47 species
Mp6g17700.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 OrthoFinder output from all 47 species
Mp6g17720.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.02 OrthoFinder output from all 47 species
Mp6g18130.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 OrthoFinder output from all 47 species
Msp_g06564 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Msp_g21467 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g12882 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Pp3c2_6690V3.1 Pp3c2_6690 GTP binding Elongation factor Tu family protein 0.02 OrthoFinder output from all 47 species
Pp3c2_6770V3.1 Pp3c2_6770 GTP binding Elongation factor Tu family protein 0.01 OrthoFinder output from all 47 species
Sam_g16999 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.05 OrthoFinder output from all 47 species
Sam_g28089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g31306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08926 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Spa_g24424 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Spa_g24425 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Spa_g24426 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11762 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.04 OrthoFinder output from all 47 species
Tin_g11763 No alias aminoacyl-tRNA binding factor *(eEF1A)) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e026762_P001 Zm00001e026762 aminoacyl-tRNA binding factor (eEF1A) 0.09 OrthoFinder output from all 47 species
Zm00001e026763_P003 Zm00001e026763 aminoacyl-tRNA binding factor (eEF1A) 0.1 OrthoFinder output from all 47 species
Zm00001e030598_P002 Zm00001e030598 aminoacyl-tRNA binding factor (eEF1A) 0.05 OrthoFinder output from all 47 species
Zm00001e031390_P004 Zm00001e031390 aminoacyl-tRNA binding factor (eEF1A) 0.07 OrthoFinder output from all 47 species
Zm00001e031391_P002 Zm00001e031391 aminoacyl-tRNA binding factor (eEF1A) 0.07 OrthoFinder output from all 47 species
Zm00001e031407_P001 Zm00001e031407 aminoacyl-tRNA binding factor (eEF1A) 0.11 OrthoFinder output from all 47 species
Zm00001e037355_P001 Zm00001e037355 aminoacyl-tRNA binding factor (eEF1A) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 322 429
IPR000795 T_Tr_GTP-bd_dom 7 222
IPR004161 EFTu-like_2 248 313
No external refs found!