1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g009620.1.1

Solyc06g009620.1.1 (Solyc06g009620)


Aliases : Solyc06g009620

Description : Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana (sp|q680z7|ppr24_arath : 454.0)


Gene families : OG0006286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g009620.1.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AT1G09190 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G09220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G33350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G56310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
GSVIVT01012620001 No alias Pentatricopeptide repeat-containing protein At1g09220,... 0.04 OrthoFinder output from all 47 species
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.09 OrthoFinder output from all 47 species
GSVIVT01025389001 OTP82 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01035920001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder output from all 47 species
Gb_33068 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
LOC_Os02g06880.1 LOC_Os02g06880 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
LOC_Os02g53050.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.03 OrthoFinder output from all 47 species
LOC_Os03g07330.1 LOC_Os03g07330 Pentatricopeptide repeat-containing protein At5g56310... 0.1 OrthoFinder output from all 47 species
LOC_Os07g25500.1 OTP84, LOC_Os07g25500 Pentatricopeptide repeat-containing protein At3g46790,... 0.08 OrthoFinder output from all 47 species
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc02g094125.1.1 Solyc02g094125 Pentatricopeptide repeat-containing protein At5g56310... 0.05 OrthoFinder output from all 47 species
Zm00001e033388_P001 OTP84, Zm00001e033388 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 286 334
IPR002885 Pentatricopeptide_repeat 181 222
IPR002885 Pentatricopeptide_repeat 362 381
IPR002885 Pentatricopeptide_repeat 125 150
IPR002885 Pentatricopeptide_repeat 258 281
No external refs found!