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  5. Solyc06g008940.4.1

Solyc06g008940.4.1 (Solyc06g008940)


Aliases : Solyc06g008940

Description : EF-Tu translation elongation factor


Gene families : OG0001305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g008940.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00115820 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
AT4G02930 No alias GTP binding Elongation factor Tu family protein 0.1 OrthoFinder output from all 47 species
Aop_g11193 No alias translation elongation factor *(EF-Tu) & original... 0.08 OrthoFinder output from all 47 species
Ceric.33G051100.1 Ceric.33G051100 translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.40 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Cre06.g259150 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Dcu_g01379 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g15550 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01011073001 No alias Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
LOC_Os03g63410.1 LOC_Os03g63410 EF-Tu translation elongation factor 0.08 OrthoFinder output from all 47 species
Len_g01241 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g01476 No alias translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
MA_198162g0010 No alias EF-Tu translation elongation factor 0.03 OrthoFinder output from all 47 species
MA_58335g0010 No alias EF-Tu translation elongation factor 0.07 OrthoFinder output from all 47 species
Mp1g14750.1 No alias EF-Tu translation elongation factor 0.05 OrthoFinder output from all 47 species
Ore_g05800 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Sam_g09872 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
Sam_g24887 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Spa_g01140 No alias translation elongation factor *(EF-Tu) & original... 0.05 OrthoFinder output from all 47 species
Tin_g06040 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e006373_P001 Zm00001e006373 EF-Tu translation elongation factor 0.08 OrthoFinder output from all 47 species
Zm00001e011649_P001 Zm00001e011649 EF-Tu translation elongation factor 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 281 350
IPR000795 T_Tr_GTP-bd_dom 64 257
IPR004160 Transl_elong_EFTu/EF1A_C 355 449
No external refs found!