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  5. Solyc06g008510.3.1

Solyc06g008510.3.1 (CDT1, ATCDT1A, CDT1A,...)


Aliases : CDT1, ATCDT1A, CDT1A, Solyc06g008510

Description : helicase auxiliary factor (CDT1)


Gene families : OG0007109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g008510.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00068790 CDT1, ATCDT1A,... Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.09 OrthoFinder output from all 47 species
AT2G31270 CDT1, ATCDT1A, CDT1A homolog of yeast CDT1 A 0.03 OrthoFinder output from all 47 species
AT3G54710 CDT1B, CDT1, ATCDT1B homolog of yeast CDT1 B homolog of yeast CDT1 B 0.04 OrthoFinder output from all 47 species
Als_g15053 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51251 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05243 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene66565.t1 CDT1, ATCDT1A,... helicase auxiliary factor *(CDT1) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.1Z001200.1 CDT1, ATCDT1A,... helicase auxiliary factor *(CDT1) & original... 0.07 OrthoFinder output from all 47 species
Cre03.g163300 No alias Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.03 OrthoFinder output from all 47 species
GSVIVT01024251001 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.11 OrthoFinder output from all 47 species
GSVIVT01028303001 CDT1, ATCDT1A, CDT1A Cell cycle.interphase.DNA replication.preinitiation.CDT1... 0.03 OrthoFinder output from all 47 species
Gb_04601 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.05 OrthoFinder output from all 47 species
LOC_Os04g10650.1 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.04 OrthoFinder output from all 47 species
LOC_Os10g34820.2 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.03 OrthoFinder output from all 47 species
MA_114779g0010 CDT1B, CDT1, ATCDT1B helicase auxiliary factor (CDT1) 0.07 OrthoFinder output from all 47 species
MA_9011g0010 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.07 OrthoFinder output from all 47 species
Mp5g09070.1 CDT1, ATCDT1A, CDT1A helicase auxiliary factor (CDT1) 0.02 OrthoFinder output from all 47 species
Msp_g13606 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g25997 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000487 CDT1, ATCDT1A, CDT1A helicase auxiliary factor *(CDT1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g27532 No alias helicase auxiliary factor *(CDT1) & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e004505_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.04 OrthoFinder output from all 47 species
Zm00001e036500_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.02 OrthoFinder output from all 47 species
Zm00001e041798_P001 CDT1, ATCDT1A,... helicase auxiliary factor (CDT1) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032054 Cdt1_C 463 555
IPR014939 CDT1_Gemini-bd-like 112 217
No external refs found!