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  5. Solyc06g007200.4.1

Solyc06g007200.4.1 (EBP1, ATEBP1, ATG2,...)


Aliases : EBP1, ATEBP1, ATG2, Solyc06g007200

Description : pre-60S ribosomal subunit export factor (ARX1)


Gene families : OG0003188 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003188_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g007200.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT3G51800 EBP1, ATEBP1, ATG2 metallopeptidase M24 family protein 0.18 OrthoFinder output from all 47 species
Aev_g19911 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.02 OrthoFinder output from all 47 species
Aob_g08287 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.03 OrthoFinder output from all 47 species
Aop_g11352 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.04 OrthoFinder output from all 47 species
Azfi_s0019.g015328 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.06 OrthoFinder output from all 47 species
Cba_g11791 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.02 OrthoFinder output from all 47 species
Ceric.06G082300.1 EBP1, ATEBP1,... pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.33 EBP1, ATEBP1, ATG2 ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum 0.02 OrthoFinder output from all 47 species
Cre13.g604650 EBP1, ATEBP1, ATG2 ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum 0.02 OrthoFinder output from all 47 species
Dac_g03227 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.11 OrthoFinder output from all 47 species
Ehy_g08408 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.04 OrthoFinder output from all 47 species
Ehy_g09075 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.02 OrthoFinder output from all 47 species
GSVIVT01003934001 EBP1, ATEBP1, ATG2 ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum 0.11 OrthoFinder output from all 47 species
Gb_24072 EBP1, ATEBP1, ATG2 pre-60S ribosomal subunit export factor (ARX1) 0.03 OrthoFinder output from all 47 species
LOC_Os05g28280.1 EBP1, ATEBP1,... pre-60S ribosomal subunit export factor (ARX1) 0.16 OrthoFinder output from all 47 species
Len_g16054 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.03 OrthoFinder output from all 47 species
MA_10426694g0010 EBP1, ATEBP1, ATG2 pre-60S ribosomal subunit export factor (ARX1) 0.05 OrthoFinder output from all 47 species
Mp8g14760.1 EBP1, ATEBP1, ATG2 pre-60S ribosomal subunit export factor (ARX1) 0.02 OrthoFinder output from all 47 species
Nbi_g02808 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.03 OrthoFinder output from all 47 species
Ppi_g08280 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.02 OrthoFinder output from all 47 species
Sam_g19099 No alias pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.06 OrthoFinder output from all 47 species
Smo79780 EBP1, ATEBP1, ATG2 ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum 0.02 OrthoFinder output from all 47 species
Spa_g54762 EBP1, ATEBP1, ATG2 pre-60S ribosomal-subunit proteome export factor *(ARX1)... 0.04 OrthoFinder output from all 47 species
Zm00001e027220_P002 EBP1, ATEBP1,... pre-60S ribosomal subunit export factor (ARX1) 0.1 OrthoFinder output from all 47 species
Zm00001e031491_P001 EBP1, ATEBP1,... pre-60S ribosomal subunit export factor (ARX1) 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000994 Pept_M24 21 224
No external refs found!