Solyc06g005060.3.1 (Solyc06g005060)

Aliases : Solyc06g005060

Description : aminoacyl-tRNA binding factor (eEF1A)

Gene families : OG0000296 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g005060.3.1
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00216110	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.13	OrthoFinder output from all 47 species
AMTR_s00066p00072310	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation elongation.eEF1A...	0.21	OrthoFinder output from all 47 species
AT1G07920	No alias	GTP binding Elongation factor Tu family protein	0.19	OrthoFinder output from all 47 species
AT1G07930	No alias	GTP binding Elongation factor Tu family protein	0.14	OrthoFinder output from all 47 species
AT1G07940	No alias	GTP binding Elongation factor Tu family protein	0.1	OrthoFinder output from all 47 species
AT5G60390	No alias	GTP binding Elongation factor Tu family protein	0.22	OrthoFinder output from all 47 species
Adi_g048689	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Adi_g109079	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g116840	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Aev_g07757	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Ala_g09896	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Ala_g31488	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Als_g11645	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Als_g26660	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Aob_g07256	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Aop_g09508	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Aop_g20702	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Azfi_s0291.g063341	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.07	OrthoFinder output from all 47 species
Cba_g03670	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g08954	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Cba_g27290	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Ceric.09G081400.1	Ceric.09G081400	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.12	OrthoFinder output from all 47 species
Ceric.11G084400.1	Ceric.11G084400	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Ceric.31G073700.1	Ceric.31G073700	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.14	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021352.57	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.04	OrthoFinder output from all 47 species
Dac_g20808	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Dac_g22627	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Dac_g40329	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.08	OrthoFinder output from all 47 species
Dcu_g09531	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Dde_g04362	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g04717	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Gb_22919	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.03	OrthoFinder output from all 47 species
LOC_Os03g08010.1	LOC_Os03g08010	aminoacyl-tRNA binding factor (eEF1A)	0.09	OrthoFinder output from all 47 species
LOC_Os03g08020.1	LOC_Os03g08020	aminoacyl-tRNA binding factor (eEF1A)	0.06	OrthoFinder output from all 47 species
LOC_Os03g08050.1	LOC_Os03g08050	aminoacyl-tRNA binding factor (eEF1A)	0.09	OrthoFinder output from all 47 species
Len_g51156	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g07312	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g07746	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g17369	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g22816	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
MA_434977g0010	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.04	OrthoFinder output from all 47 species
MA_505653g0010	No alias	Elongation factor 1-alpha OS=Triticum aestivum...	0.03	OrthoFinder output from all 47 species
MA_651220g0010	No alias	Elongation factor 1-alpha OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Mp3g23400.1	No alias	aminoacyl-tRNA binding factor (eEF1A)	0.18	OrthoFinder output from all 47 species
Msp_g06541	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Msp_g06564	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Msp_g21467	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Msp_g29578	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g06194	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.07	OrthoFinder output from all 47 species
Ore_g12703	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.06	OrthoFinder output from all 47 species
Ore_g45064	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.05	OrthoFinder output from all 47 species
Pir_g29386	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Pnu_g12882	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Pp3c2_6770V3.1	Pp3c2_6770	GTP binding Elongation factor Tu family protein	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006537	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009882	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Sam_g07574	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Sam_g16997	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Sam_g16999	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.09	OrthoFinder output from all 47 species
Sam_g28089	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g29350	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.09	OrthoFinder output from all 47 species
Sam_g37732	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Sam_g39768	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.08	OrthoFinder output from all 47 species
Smo169717	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.04	OrthoFinder output from all 47 species
Smo171512	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.03	OrthoFinder output from all 47 species
Smo270693	No alias	Protein biosynthesis.translation elongation.eEF1A...	0.03	OrthoFinder output from all 47 species
Spa_g08926	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.11	OrthoFinder output from all 47 species
Spa_g18945	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Spa_g24424	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.08	OrthoFinder output from all 47 species
Spa_g24425	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.11	OrthoFinder output from all 47 species
Spa_g24426	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g46936	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.02	OrthoFinder output from all 47 species
Spa_g50271	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.03	OrthoFinder output from all 47 species
Spa_g50273	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.08	OrthoFinder output from all 47 species
Tin_g11763	No alias	aminoacyl-tRNA binding factor *(eEF1A)) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e026762_P001	Zm00001e026762	aminoacyl-tRNA binding factor (eEF1A)	0.08	OrthoFinder output from all 47 species
Zm00001e026763_P003	Zm00001e026763	aminoacyl-tRNA binding factor (eEF1A)	0.07	OrthoFinder output from all 47 species
Zm00001e031390_P004	Zm00001e031390	aminoacyl-tRNA binding factor (eEF1A)	0.05	OrthoFinder output from all 47 species
Zm00001e031391_P002	Zm00001e031391	aminoacyl-tRNA binding factor (eEF1A)	0.03	OrthoFinder output from all 47 species
Zm00001e031407_P001	Zm00001e031407	aminoacyl-tRNA binding factor (eEF1A)	0.07	OrthoFinder output from all 47 species
Zm00001e037355_P001	Zm00001e037355	aminoacyl-tRNA binding factor (eEF1A)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004160	Transl_elong_EFTu/EF1A_C	322	429
IPR000795	T_Tr_GTP-bd_dom	7	222
IPR004161	EFTu-like_2	248	313

External Links

No external refs found!

Solyc06g005060.3.1 (Solyc06g005060)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation