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  5. Solyc05g055500.1.1

Solyc05g055500.1.1 (Solyc05g055500)


Aliases : Solyc05g055500

Description : C2H2 zinc finger transcription factor


Gene families : OG0000238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g055500.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00120810 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.12 OrthoFinder output from all 47 species
AMTR_s00110p00085760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
AT1G02040 No alias C2H2-type zinc finger family protein 0.05 OrthoFinder output from all 47 species
AT2G45120 No alias C2H2-like zinc finger protein 0.05 OrthoFinder output from all 47 species
AT3G10470 No alias C2H2-type zinc finger family protein 0.04 OrthoFinder output from all 47 species
AT3G19580 AZF2, ZF2 zinc-finger protein 2 0.04 OrthoFinder output from all 47 species
AT5G04390 No alias C2H2-type zinc finger family protein 0.05 OrthoFinder output from all 47 species
Aev_g13495 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Als_g15277 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene04561.t1 Aspi01Gene04561 regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47315.t1 Aspi01Gene47315 regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025422 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Azfi_s0577.g078251 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Dac_g07569 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Ehy_g15214 AZF2, ZF2 C2H2-type subclass ZAT transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g27453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023887001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.14 OrthoFinder output from all 47 species
LOC_Os02g44120.1 LOC_Os02g44120 C2H2 zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
LOC_Os03g55540.1 CZF2, ZAT6,... C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g60560.1 LOC_Os03g60560 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os04g46670.1 LOC_Os04g46670 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Len_g29411 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Len_g33794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426405g0010 No alias C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g31642 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Msp_g35114 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Msp_g36591 No alias regulatory protein *(DAZ) of male germ cell division &... 0.04 OrthoFinder output from all 47 species
Pnu_g08150 No alias C2H2-type subclass ZAT transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g47413 No alias regulatory protein *(DAZ) of male germ cell division &... 0.04 OrthoFinder output from all 47 species
Sam_g35489 No alias regulatory protein *(DAZ) of male germ cell division &... 0.02 OrthoFinder output from all 47 species
Solyc01g090830.2.1 Solyc01g090830 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc06g075780.3.1 Solyc06g075780 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Spa_g15487 No alias regulatory protein *(DAZ) of male germ cell division &... 0.03 OrthoFinder output from all 47 species
Spa_g57323 No alias regulatory protein *(DAZ) of male germ cell division &... 0.05 OrthoFinder output from all 47 species
Zm00001e007312_P001 Zm00001e007312 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e038072_P001 CZF2, ZAT6,... C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!