Solyc05g054070.4.1 (Solyc05g054070)

Aliases : Solyc05g054070

Description : component RPL6 of LSU proteome component

Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g054070.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00218700	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
AT1G18540	No alias	Ribosomal protein L6 family protein	0.2	OrthoFinder output from all 47 species
AT1G74050	No alias	Ribosomal protein L6 family protein	0.14	OrthoFinder output from all 47 species
AT1G74060	No alias	Ribosomal protein L6 family protein	0.09	OrthoFinder output from all 47 species
Adi_g112035	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aev_g02805	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g05526	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g24717	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g06856	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Aop_g53417	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aspi01Gene09131.t1	Aspi01Gene09131	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene59148.t1	Aspi01Gene59148	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0313.g064223	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g22295	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.29G021300.1	Ceric.29G021300	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.29G025100.1	Ceric.29G025100	component *(eL6) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.127	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Cre01.g011000	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Dac_g11635	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g11900	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Dcu_g34737	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ehy_g05475	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01032041001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01033532001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
Gb_01604	No alias	component RPL6 of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os02g37862.1	LOC_Os02g37862	component RPL6 of LSU proteome component	0.19	OrthoFinder output from all 47 species
LOC_Os04g39700.1	LOC_Os04g39700	component RPL6 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Len_g32251	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Len_g33706	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g12580	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g31990	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_108607g0010	No alias	component RPL6 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Mp3g11670.1	No alias	component RPL6 of LSU proteome component	0.17	OrthoFinder output from all 47 species
Msp_g07934	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Msp_g36122	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g13634	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g62336	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pp3c14_4160V3.1	Pp3c14_4160	Ribosomal protein L6 family protein	0.08	OrthoFinder output from all 47 species
Pp3c1_24300V3.1	Pp3c1_24300	Ribosomal protein L6 family protein	0.05	OrthoFinder output from all 47 species
Pp3c2_13300V3.1	Pp3c2_13300	Ribosomal protein L6 family protein	0.04	OrthoFinder output from all 47 species
Ppi_g11150	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g28246	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011154	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016460	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g06914	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g08583	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Sam_g08584	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g19281	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g26138	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g28243	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g31628	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g33761	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g45675	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g47556	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Smo270686	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Spa_g16223	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Spa_g44572	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Tin_g01561	No alias	component *(eL6) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Zm00001e014979_P001	Zm00001e014979	component RPL6 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Zm00001e022840_P001	Zm00001e022840	component RPL6 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Zm00001e022841_P001	Zm00001e022841	component RPL6 of LSU proteome component	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000915	60S_ribosomal_L6E	122	229
IPR005568	Ribosomal_L6_N	5	57

External Links

No external refs found!

Solyc05g054070.4.1 (Solyc05g054070)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation