Solyc05g053570.4.1 (ABCG40, PDR12,...)


Aliases : ABCG40, PDR12, ATABCG40, ATPDR12, Solyc05g053570

Description : subfamily ABCG transporter


Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g053570.4.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Als_g48617 ABCG40, PDR12,... subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
MA_10427561g0010 ABCG40, PDR12,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
MA_10427561g0020 ABCG40, PDR12,... ABC transporter G family member 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_10436632g0010 ABCG40, PDR12,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Ore_g15168 ABCG40, PDR12,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g055530.4.1 ATPDR3, PDR3,... ABC transporter G family member 31 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e037233_P001 PEN3, ABCG36,... subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR013581 PDR_assoc 720 779
IPR003439 ABC_transporter-like_ATP-bd 167 349
IPR013525 ABC_2_trans 504 715
IPR013525 ABC_2_trans 1139 1353
IPR029481 ABC_trans_N 79 142
IPR003439 ABC_transporter-like_ATP-bd 842 994
No external refs found!