Solyc05g052070.3.1 (ATRAB1B, RABD2A,...)

Aliases : ATRAB1B, RABD2A, ATRABD2A, ARA5, RA-5, ARA-5, Solyc05g052070

Description : D-class RAB GTPase

Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g052070.3.1
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
Adi_g013330	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g24852	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0095.g043564	ATRAB1A, ATRABD2B, RAB1A	D-class RAB GTPase & original description: CDS=1193-1804	0.04	OrthoFinder output from all 47 species
Cba_g23257	ATRAB1B, RABD2A,...	D-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Cre12.g560150	ATRAB1A, ATRABD2B, RAB1A	Vesicle trafficking.regulation of membrane tethering and...	0.01	OrthoFinder output from all 47 species
MA_10428310g0010	ATRAB1B, RABD2A,...	Ras-related protein RIC1 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Zm00001e023144_P001	ATRAB1B, RABD2A,...	D-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	170

External Links

No external refs found!