Solyc05g051790.3.1 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A, Solyc05g051790

Description : subunit 5 of RNA polymerase


Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g051790.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G22320 NRPD5,... Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 OrthoFinder output from all 47 species
Cba_g54352 NRPD5,... component *(NRPD5) of RNA polymerase IV complex &... 0.02 OrthoFinder output from all 47 species
Cre09.g403219 NRPD5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 OrthoFinder output from all 47 species
Dde_g02603 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g15816 NRPD5,... component *(NRPD5) of RNA polymerase IV complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os04g41040.1 NRPD5,... subunit 5 of RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005571 RNA_pol_Rpb5_N 5 90
IPR000783 RNA_pol_subH/Rpb5_C 133 205
No external refs found!