LOC_Os03g40020.1


Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana (sp|q9lff1|pp281_arath : 786.0)


Gene families : OG_01_0010963 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010963_tree ,
OG_02_0010911 (LandPlants) Phylogenetic Tree(s): OG_02_0010911_tree ,
OG_03_0010842 (SeedPlants) Phylogenetic Tree(s): OG_03_0010842_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g40020.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.06 Archaeplastida
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.21 Archaeplastida
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.12 Archaeplastida
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.12 Archaeplastida
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.11 Archaeplastida
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.05 LandPlants
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.2 LandPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.11 LandPlants
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.1 LandPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.1 LandPlants
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.05 SeedPlants
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.19 SeedPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.09 SeedPlants
Solyc09g010450.1.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.1 SeedPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.1 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 280 313
IPR002885 Pentatricopeptide_repeat 245 271
IPR002885 Pentatricopeptide_repeat 393 438
IPR002885 Pentatricopeptide_repeat 603 648
IPR002885 Pentatricopeptide_repeat 319 368
IPR002885 Pentatricopeptide_repeat 460 508
IPR002885 Pentatricopeptide_repeat 529 578
IPR002885 Pentatricopeptide_repeat 179 227
No external refs found!