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  5. Solyc05g024010.3.1

Solyc05g024010.3.1 (Solyc05g024010)


Aliases : Solyc05g024010

Description : transcription factor (BBX-CO)


Gene families : OG0001549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g024010.3.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00175210 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AT1G28050 No alias B-box type zinc finger protein with CCT domain 0.07 OrthoFinder output from all 47 species
AT3G07650 COL9 CONSTANS-like 9 0.17 OrthoFinder output from all 47 species
AT5G48250 No alias B-box type zinc finger protein with CCT domain 0.05 OrthoFinder output from all 47 species
Adi_g085060 No alias BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05807.t2 COL9, Aspi01Gene05807 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000462 COL9 BBX class-II transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024861 COL9 not classified & original description: CDS=1-1125 0.04 OrthoFinder output from all 47 species
Azfi_s0056.g034222 COL9 BBX class-II transcription factor & original... 0.07 OrthoFinder output from all 47 species
Ceric.35G051200.1 COL9, Ceric.35G051200 BBX class-II transcription factor & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01003473001 COL9 Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_09427 No alias transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Gb_28222 COL9 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g49230.2 COL9, LOC_Os02g49230 transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species
LOC_Os06g19444.1 COL9, LOC_Os06g19444 transcription factor (BBX-CO) 0.07 OrthoFinder output from all 47 species
Msp_g19193 COL9 BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02311 No alias BBX class-II transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011515 COL9 BBX class-II transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo444089 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Tin_g12507 No alias BBX class-II transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e003699_P002 Zm00001e003699 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 404 446
IPR000315 Znf_B-box 50 93
No external refs found!