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  5. Solyc05g023680.4.1

Solyc05g023680.4.1 (VIM1, ORTH2, Solyc05g023680)


Aliases : VIM1, ORTH2, Solyc05g023680

Description : E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana (sp|q8vyz0|orth2_arath : 763.0)


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc05g023680.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00085910 VIM1, ORTH2,... E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT4G08590 ORTHL, ORL1, VIM6 ORTHRUS-like 0.04 OrthoFinder output from all 47 species
Adi_g085235 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Len_g03522 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Len_g53933 VIM5, ORTH3 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR003105 SRA_YDG 275 422
IPR027370 Znf-RING_euk 514 568
No external refs found!