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  5. Solyc05g021190.2.1

Solyc05g021190.2.1 (PSBD, Solyc05g021190)


Aliases : PSBD, Solyc05g021190

Description : Photosystem II D2 protein OS=Pleurastrum terricola (sp|a6yg76|psbd_plete : 120.0)


Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g021190.2.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00011330 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 OrthoFinder output from all 47 species
AMTR_s00090p00098500 PSBA Photosystem II protein D1 OS=Nephroselmis olivacea 0.05 OrthoFinder output from all 47 species
AMTR_s00102p00106890 PSBD,... Photosystem II D2 protein OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
AMTR_s00172p00027480 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
AMTR_s00172p00030370 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
AMTR_s00172p00038240 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
AMTR_s00172p00040120 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
AMTR_s00390p00002060 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 OrthoFinder output from all 47 species
ATCG00020 PSBA photosystem II reaction center protein A 0.05 OrthoFinder output from all 47 species
ATCG00270 PSBD photosystem II reaction center protein D 0.06 OrthoFinder output from all 47 species
Aev_g03797 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Aev_g33560 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Aob_g01728 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.01G054300.1 PSBA, Ceric.01G054300 not classified & original description: pacid=50591444... 0.03 OrthoFinder output from all 47 species
Ceric.01G066400.1 PSBA, Ceric.01G066400 not classified & original description: pacid=50590620... 0.03 OrthoFinder output from all 47 species
Ceric.02G016000.1 PSBD, Ceric.02G016000 component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.02G046500.1 PSBA, Ceric.02G046500 not classified & original description: pacid=50584544... 0.03 OrthoFinder output from all 47 species
Ceric.05G040100.1 PSBA, Ceric.05G040100 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.05G043300.1 PSBA, Ceric.05G043300 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.06G028100.1 PSBA, Ceric.06G028100 not classified & original description: pacid=50620820... 0.04 OrthoFinder output from all 47 species
Ceric.07G060900.1 PSBA, Ceric.07G060900 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.09G049700.1 PSBA, Ceric.09G049700 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.12G058600.1 PSBA, Ceric.12G058600 not classified & original description: pacid=50600847... 0.03 OrthoFinder output from all 47 species
Ceric.13G053600.1 PSBA, Ceric.13G053600 not classified & original description: pacid=50635334... 0.03 OrthoFinder output from all 47 species
Ceric.16G061600.1 PSBA, Ceric.16G061600 not classified & original description: pacid=50589682... 0.03 OrthoFinder output from all 47 species
Ceric.18G054200.1 PSBA, Ceric.18G054200 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.1Z020700.1 PSBA, Ceric.1Z020700 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.22G078100.1 PSBA, Ceric.22G078100 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.28G022100.1 PSBA, Ceric.28G022100 not classified & original description: pacid=50570095... 0.03 OrthoFinder output from all 47 species
Ceric.29G003100.1 PSBA, Ceric.29G003100 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.29G032300.1 PSBD, Ceric.29G032300 component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.31G004800.1 PSBA, Ceric.31G004800 not classified & original description: pacid=50574421... 0.03 OrthoFinder output from all 47 species
Ceric.33G038500.1 PSBA, Ceric.33G038500 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.34G004800.1 PSBA, Ceric.34G004800 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.35G011500.1 PSBA, Ceric.35G011500 not classified & original description: pacid=50581506... 0.03 OrthoFinder output from all 47 species
Ceric.36G044800.1 PSBA, Ceric.36G044800 not classified & original description: pacid=50568302... 0.03 OrthoFinder output from all 47 species
GSVIVT01029661001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
Gb_03955 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.03 OrthoFinder output from all 47 species
Gb_09035 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.03 OrthoFinder output from all 47 species
Gb_18604 PSBA Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.03 OrthoFinder output from all 47 species
Gb_20129 PSBA Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.03 OrthoFinder output from all 47 species
LOC_Os04g16872.1 PSBD, LOC_Os04g16872 component PsbD/D2 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
LOC_Os10g21192.1 PSBA, LOC_Os10g21192 component PsbA/D1 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g19580.1 PSBA, LOC_Os12g19580 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Ore_g00373 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Ore_g12399 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Smo137879 PSBD Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 OrthoFinder output from all 47 species
Smo139195 PSBA Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.04 OrthoFinder output from all 47 species
Smo236852 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 OrthoFinder output from all 47 species
Solyc00g500130.1.1 PSBA, Solyc00g500130 component PsbA/D1 of PS-II reaction center complex 0.05 OrthoFinder output from all 47 species
Solyc00g500200.1.1 PSBA, Solyc00g500200 component PsbA/D1 of PS-II reaction center complex 0.05 OrthoFinder output from all 47 species
Solyc00g500296.1.1 PSBA, Solyc00g500296 component PsbA/D1 of PS-II reaction center complex 0.05 OrthoFinder output from all 47 species
Solyc00g500329.1.1 PSBA, Solyc00g500329 component PsbA/D1 of PS-II reaction center complex 0.05 OrthoFinder output from all 47 species
Tin_g12149 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e036844_P001 PSBA, Zm00001e036844 Photosystem II protein D1 OS=Zea mays... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 19 82
No external refs found!