1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g020020.4.1

Solyc05g020020.4.1 (Solyc05g020020)


Aliases : Solyc05g020020

Description : transcription factor (BBX-CO)


Gene families : OG0001549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001549_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g020020.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g085060 No alias BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.35G051200.1 COL9, Ceric.35G051200 BBX class-II transcription factor & original... 0.05 OrthoFinder output from all 47 species
Gb_06394 No alias transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g49230.2 COL9, LOC_Os02g49230 transcription factor (BBX-CO) 0.07 OrthoFinder output from all 47 species
LOC_Os06g19444.1 COL9, LOC_Os06g19444 transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species
Len_g08132 COL9 BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012315 COL9 BBX class-II transcription factor & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019627 urea metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043419 urea catabolic process IEP HCCA
BP GO:0043605 amide catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071941 nitrogen cycle metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 356 398
No external refs found!