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Aliases : ATCAF1, CAF1, Solyc05g018240
Description : component CAF of CRS2-CAF plastidial RNA splicing factor complexes
Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00056p00043140 | ATCAF1, CAF1,... | RNA processing.organelle machineries.RNA... | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s00340p00004320 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G23400 | CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G20020 | ATCAF1, CAF1 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g015701 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g015702 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g106797 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g10007 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g19873 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g34328 | ATCAF1, CAF1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g15381 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g30903 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g07417 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g14385 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g13815 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g06914 | CAF2, ATCAF2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.11G050500.1 | CAF2, ATCAF2,... | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.13G021700.1 | ATCAF1, CAF1,... | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g14796 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g25068 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g10026 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g19169 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015331001 | ATCAF1, CAF1 | RNA processing.organelle machineries.RNA... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_15740 | CAF2, ATCAF2 | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g21990.1 | CAF2, ATCAF2,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g16965 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.06 | OrthoFinder output from all 47 species | |
| MA_757065g0010 | CAF2, ATCAF2 | CRS2-associated factor 2, chloroplastic OS=Oryza sativa... | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g31805 | CAF2, ATCAF2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g08909 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g24662 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g30110 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g02160 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g08767 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g10803 | ATCAF1, CAF1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g11454 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g05287 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g29789 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g56937 | CAF2, ATCAF2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g06701 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g31214 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g51985 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| No external refs found! |