LOC_Os03g38980.1

Description : lysine-tRNA ligase

Gene families : OG_01_0004662 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004662_tree ,
OG_02_0005395 (LandPlants) Phylogenetic Tree(s): OG_02_0005395_tree ,
OG_03_0006169 (SeedPlants) Phylogenetic Tree(s): OG_03_0006169_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g38980.1
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00070350	evm_27.TU.AmTr_v1...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	Archaeplastida
AT3G11710	ATKRS-1	lysyl-tRNA synthetase 1	0.16	Archaeplastida
Cpa\|evm.model.tig00020510.54	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	Archaeplastida
Cpa\|evm.model.tig00020510.55	No alias	Lysine--tRNA ligase OS=Oryza sativa subsp. japonica	0.02	Archaeplastida
Cre03.g160500	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.09	Archaeplastida
Gb_06956	No alias	lysine-tRNA ligase	0.1	Archaeplastida
MA_10429295g0010	No alias	lysine-tRNA ligase	0.08	Archaeplastida
Mp4g22190.1	No alias	lysine-tRNA ligase	0.14	Archaeplastida
Pp3c12_20520V3.1	No alias	lysyl-tRNA synthetase 1	0.08	Archaeplastida
Pp3c4_7510V3.1	No alias	lysyl-tRNA synthetase 1	0.11	Archaeplastida
Solyc06g073330.4.1	No alias	lysine-tRNA ligase	0.15	Archaeplastida
Zm00001e004913_P001	No alias	lysine-tRNA ligase	0.07	Archaeplastida
Zm00001e012475_P001	No alias	lysine-tRNA ligase	0.14	Archaeplastida
AMTR_s00071p00070350	evm_27.TU.AmTr_v1...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	LandPlants
AT3G11710	ATKRS-1	lysyl-tRNA synthetase 1	0.16	LandPlants
Gb_06956	No alias	lysine-tRNA ligase	0.09	LandPlants
MA_10429295g0010	No alias	lysine-tRNA ligase	0.07	LandPlants
Mp4g22190.1	No alias	lysine-tRNA ligase	0.14	LandPlants
Pp3c12_20520V3.1	No alias	lysyl-tRNA synthetase 1	0.08	LandPlants
Pp3c4_7510V3.1	No alias	lysyl-tRNA synthetase 1	0.11	LandPlants
Solyc06g073330.4.1	No alias	lysine-tRNA ligase	0.15	LandPlants
Zm00001e004913_P001	No alias	lysine-tRNA ligase	0.07	LandPlants
Zm00001e012475_P001	No alias	lysine-tRNA ligase	0.14	LandPlants
AMTR_s00071p00070350	evm_27.TU.AmTr_v1...	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.05	SeedPlants
AT3G11710	ATKRS-1	lysyl-tRNA synthetase 1	0.15	SeedPlants
Gb_06956	No alias	lysine-tRNA ligase	0.09	SeedPlants
MA_10429295g0010	No alias	lysine-tRNA ligase	0.06	SeedPlants
Solyc06g073330.4.1	No alias	lysine-tRNA ligase	0.15	SeedPlants
Zm00001e004913_P001	No alias	lysine-tRNA ligase	0.07	SeedPlants
Zm00001e012475_P001	No alias	lysine-tRNA ligase	0.13	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004364	Aa-tRNA-synt_II	249	598
IPR004365	NA-bd_OB_tRNA	134	213

External Links

No external refs found!

LOC_Os03g38980.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation