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  5. Solyc05g012190.3.1

Solyc05g012190.3.1 (CDC48B, Solyc05g012190)


Aliases : CDC48B, Solyc05g012190

Description : Cell division control protein 48 homolog B OS=Arabidopsis thaliana (sp|q9zpr1|cd48b_arath : 724.0)


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g012190.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00076410 CDC48B,... Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
AT2G03670 CDC48B cell division cycle 48B 0.03 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.05 OrthoFinder output from all 47 species
AT3G56690 CIP111 Cam interacting protein 111 0.05 OrthoFinder output from all 47 species
Adi_g003343 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054679 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02580 CDC48B platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0074.g037436 CIP111 not classified & original description: CDS=701-3814 0.02 OrthoFinder output from all 47 species
Cba_g77518 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G061700.1 emb1354, CDC48C,... platform ATPase CDC48 & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000525.10 emb1354, CDC48C Cell division control protein 48 homolog C... 0.01 OrthoFinder output from all 47 species
Cre09.g398550 emb1354, CDC48C Cell division control protein 48 homolog C... 0.01 OrthoFinder output from all 47 species
Cre17.g700300 CDC48B Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
Dcu_g04096 CIP111 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03992 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09095 CDC48B platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
LOC_Os11g11340.1 CIP111, LOC_Os11g11340 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g22643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g13350.1 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g20500.1 CDC48B Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Pir_g01985 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53020 emb1354, CDC48C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13901 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25222 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Smo173081 CDC48B Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Spa_g04738 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021405_P001 CIP111, Zm00001e021405 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e035514_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 214 263
IPR041569 AAA_lid_3 481 526
IPR003959 ATPase_AAA_core 55 190
IPR003959 ATPase_AAA_core 326 458
No external refs found!