Solyc05g010300.4.1 (NRPB3, RPB35.5A,...)

Aliases : NRPB3, RPB35.5A, RBP36A, NRPD3, NRPE3A, Solyc05g010300

Description : subunit 3 of RNA polymerase

Gene families : OG0005241 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005241_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g010300.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00194050	NRPB3, RPB35.5A,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
AT2G15430	NRPB3, RPB35.5A,...	DNA-directed RNA polymerase family protein	0.02	OrthoFinder output from all 47 species
Adi_g000600	NRPB3, RPB35.5A,...	component *(NRPE3) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Aev_g04584	NRPB3, RPB35.5A,...	component *(NRPE3) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Aop_g00452	NRPB3, RPB35.5A,...	component *(NRPE3) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Cba_g05100	NRPB3, RPB35.5A,...	component *(NRPE3) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Dac_g01444	NRPB3, RPB35.5A,...	component *(NRPE3) of RNA polymerase V complex &...	0.04	OrthoFinder output from all 47 species
GSVIVT01003174001	NRPB3, RPB35.5A,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010315	NRPB3, RPB35.5A,...	component *(NRPE3) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Sam_g38872	No alias	component *(NRPE3) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Spa_g13173	NRPB3, RPB35.5A,...	component *(NRPE3) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e009442_P002	NRPB3, RPB35.5A,...	subunit 3 of RNA polymerase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0106413	dihydrouridine synthase activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3	23	293
IPR011262	DNA-dir_RNA_pol_insert	53	181

External Links

No external refs found!

Solyc05g010300.4.1 (NRPB3, RPB35.5A,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation