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  5. Solyc05g009770.3.1

Solyc05g009770.3.1 (WIP6, DOT5, Solyc05g009770)


Aliases : WIP6, DOT5, Solyc05g009770

Description : C2H2 zinc finger transcription factor


Gene families : OG0001814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g009770.3.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00243980 WIP2, NTT,... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.08 OrthoFinder output from all 47 species
Azfi_s0011.g012566 WIP5 C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g27376 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g23817 WIP5 C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011943001 WIP6, DOT5 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 OrthoFinder output from all 47 species
GSVIVT01033329001 WIP2, NTT RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
Len_g09772 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
MA_3555g0010 WIP6, DOT5 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Nbi_g17084 WIP5 C2H2 subclass WIP transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g22187 No alias C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo57114 WIP2, NTT RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 OrthoFinder output from all 47 species
Solyc01g087050.3.1 WIP2, NTT, Solyc01g087050 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Tin_g14883 WIP5 C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Tin_g31555 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.04 OrthoFinder output from all 47 species
Zm00001e009663_P001 WIP6, DOT5,... C2H2 zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Zm00001e024373_P001 WIP2, NTT, Zm00001e024373 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e026959_P001 WIP5, Zm00001e026959 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e033781_P001 WIP6, DOT5,... C2H2 zinc finger transcription factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!