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  5. Solyc05g008540.3.1

Solyc05g008540.3.1 (ATORC4, ORC4, Solyc05g008540)


Aliases : ATORC4, ORC4, Solyc05g008540

Description : component ORC4 of origin recognition complex


Gene families : OG0007435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g008540.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Als_g03670 ATORC4, ORC4 component *(ORC4) of origin recognition complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035918 ATORC4, ORC4 component *(ORC4) of origin recognition complex &... 0.03 OrthoFinder output from all 47 species
Cre17.g726500 No alias Cell cycle.interphase.DNA... 0.08 OrthoFinder output from all 47 species
Dcu_g32443 ATORC4, ORC4 component *(ORC4) of origin recognition complex &... 0.08 OrthoFinder output from all 47 species
GSVIVT01011806001 ATORC4, ORC4 Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species
Gb_26568 ATORC4, ORC4 component ORC4 of origin recognition complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g49010.1 ATORC4, ORC4,... component ORC4 of origin recognition complex 0.03 OrthoFinder output from all 47 species
Mp2g04100.1 ATORC4, ORC4 component ORC4 of origin recognition complex 0.11 OrthoFinder output from all 47 species
Nbi_g11859 ATORC4, ORC4 component *(ORC4) of origin recognition complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014741 ATORC4, ORC4 component *(ORC4) of origin recognition complex &... 0.03 OrthoFinder output from all 47 species
Spa_g07676 ATORC4, ORC4 component *(ORC4) of origin recognition complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e020143_P003 ATORC4, ORC4,... component ORC4 of origin recognition complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036297 interstrand cross-link repair IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043240 Fanconi anaemia nuclear complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 56 201
IPR032705 ORC4_C 216 399
No external refs found!