1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g008350.3.1

Solyc05g008350.3.1 (Solyc05g008350)


Aliases : Solyc05g008350

Description : subfamily ABCG transporter


Gene families : OG0005321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005321_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g008350.3.1

Target Alias Description ECC score Gene Family Method Actions
AT2G01320 No alias ABC-2 type transporter family protein 0.06 OrthoFinder output from all 47 species
Adi_g051871 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13953 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01878 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24507 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.26 No alias ABC transporter G family member 9 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g16817 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01707 No alias subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04872 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011781001 No alias Solute transport.primary active transport.ABC... 0.05 OrthoFinder output from all 47 species
Len_g11882 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05491 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g18640.1 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Sam_g15552 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Smo130461 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Spa_g15739 No alias subfamily ABCG transporter & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 87 239
IPR013525 ABC_2_trans 386 597
No external refs found!