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Aliases : Solyc05g008330
Description : Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana (sp|q9c9a2|pp112_arath : 593.0)
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc05g008330.3.1 | |
| Cluster | HCCA: Cluster_81 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G20300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT1G80880 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT3G22670 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G15010 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g023342 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g103303 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g03187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g48152 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g22080 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g11814 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g15608 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene64236.t1 | Aspi01Gene64236 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g10252 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g23699 | No alias | group-II intron mitochondrial splicing factor *(MISF68)... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g07047 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g27861 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05532 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g39023 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g23072 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01014289001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01017111001 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01017293001 | No alias | Pentatricopeptide repeat-containing protein At1g52640,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_06907 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_11871 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_13617 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_20376 | No alias | group-II intron mitochondrial splicing factor (MISF68) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_32987 | No alias | Pentatricopeptide repeat-containing protein At5g18390,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g05860.1 | LOC_Os01g05860 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g52220.1 | LOC_Os02g52220 | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g51840.1 | LOC_Os03g51840 | Pentatricopeptide repeat-containing protein At3g49730... | 0.02 | OrthoFinder output from all 47 species | |
| MA_12748g0020 | No alias | Pentatricopeptide repeat-containing protein At1g79540... | 0.03 | OrthoFinder output from all 47 species | |
| MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.06 | OrthoFinder output from all 47 species | |
| MA_387336g0010 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_8206159g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.04 | OrthoFinder output from all 47 species | |
| MA_929381g0010 | OTP43 | OTP43 mitochondrial RNA splicing factor | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g13600.1 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g08820 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g08945 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0021.g008361 | No alias | not classified & original description: CDS=1-1977 | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09961 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e005446_P003 | Zm00001e005446 | group-II intron mitochondrial splicing factor (MISF68) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e005758_P001 | Zm00001e005758 | Pentatricopeptide repeat-containing protein At1g77360,... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e013118_P001 | Zm00001e013118 | Pentatricopeptide repeat-containing protein At3g61360... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026896_P001 | Zm00001e026896 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e028873_P001 | Zm00001e028873 | Pentatricopeptide repeat-containing protein At5g15010,... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e031478_P001 | Zm00001e031478 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e036197_P001 | Zm00001e036197 | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| No external refs found! |