Solyc05g008230.3.1 (Solyc05g008230)

Aliases : Solyc05g008230

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g008230.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00267930	evm_27.TU.AmTr_v1...	U-box domain-containing protein 19 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00072p00171260	PUB14, ATPUB14,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AT1G60190	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G58680	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054040	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g056335	PUB8, B80	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g083407	PUB13, ATPUB13	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g05890	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06711	PUB18, ATPUB18	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene01377.t1	PUB14, ATPUB14,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09286.t1	Aspi01Gene09286	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene28659.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene65975.t1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0011.g012763	PUB12, AtPUB12	not classified & original description: CDS=1-549	0.03	OrthoFinder output from all 47 species
Azfi_s0024.g020334	PUB12, AtPUB12	not classified & original description: CDS=1-453	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000215.128	No alias	COMPASS-like H3K4 histone methylase component WDR5A...	0.01	OrthoFinder output from all 47 species
Dcu_g05458	PUB14, ATPUB14	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g07191	PUB18, ATPUB18	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02771	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Gb_29276	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
LOC_Os01g72600.1	LOC_Os01g72600	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os05g39930.1	LOC_Os05g39930	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os06g01304.1	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Len_g03070	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g13185	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species
MA_375372g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_69133g0010	PUB14, ATPUB14	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g31758	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g37725	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g02927	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g07136	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g28799	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11295	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12544	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g35847	PUB14, ATPUB14	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g17953	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g26460	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020568	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=347-2224	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023812	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1-1965	0.03	OrthoFinder output from all 47 species
Sam_g27911	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g11467	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g11468	PUB14, ATPUB14	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Zm00001e031915_P001	Zm00001e031915	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e034012_P001	Zm00001e034012	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	267	338
IPR000225	Armadillo	479	517
IPR000225	Armadillo	397	435

External Links

No external refs found!

Solyc05g008230.3.1 (Solyc05g008230)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation