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  5. Solyc05g006800.2.1

Solyc05g006800.2.1 (CRR28, Solyc05g006800)


Aliases : CRR28, Solyc05g006800

Description : Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana (sp|q0wqw5|ppr85_arath : 567.0)


Gene families : OG0006286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g006800.2.1

Target Alias Description ECC score Gene Family Method Actions
AT1G09220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G33350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G56310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.06 OrthoFinder output from all 47 species
GSVIVT01025389001 OTP82 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
GSVIVT01027634001 CRR4 Pentatricopeptide repeat-containing protein At2g45350,... 0.08 OrthoFinder output from all 47 species
GSVIVT01035920001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Gb_33068 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g07330.1 LOC_Os03g07330 Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
LOC_Os05g01635.1 LOC_Os05g01635 Pentatricopeptide repeat-containing protein At3g51320... 0.03 OrthoFinder output from all 47 species
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc02g094125.1.1 Solyc02g094125 Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 366 391
IPR002885 Pentatricopeptide_repeat 163 188
IPR002885 Pentatricopeptide_repeat 266 289
IPR002885 Pentatricopeptide_repeat 292 338
IPR002885 Pentatricopeptide_repeat 87 135
IPR002885 Pentatricopeptide_repeat 190 235
No external refs found!