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  5. Solyc05g006690.3.1

Solyc05g006690.3.1 (Solyc05g006690)


Aliases : Solyc05g006690

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 163.0)


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g006690.3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00013p00068990 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00033p00171210 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G67150 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT2G44930 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT3G44710 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.07 OrthoFinder output from all 47 species
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.07 OrthoFinder output from all 47 species
AT3G50160 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50190 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
Adi_g000733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g58761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01288 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72945.t1 Aspi01Gene72945 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G043100.1 Ceric.08G043100 not classified & original description: pacid=50638846... 0.04 OrthoFinder output from all 47 species
Ceric.11G038500.1 Ceric.11G038500 not classified & original description: pacid=50595115... 0.03 OrthoFinder output from all 47 species
Ceric.30G007100.1 Ceric.30G007100 not classified & original description: pacid=50608898... 0.03 OrthoFinder output from all 47 species
Dac_g37257 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g19005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014791001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_28782 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
LOC_Os01g38190.1 LOC_Os01g38190 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os04g42650.1 LOC_Os04g42650 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os08g30520.1 LOC_Os08g30520 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g29620.1 LOC_Os12g29620 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g00358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g42582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16843 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g30785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g54723 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g63876 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012180 No alias not classified & original description: CDS=1-1593 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0177.g024624 No alias not classified & original description: CDS=1-1758 0.03 OrthoFinder output from all 47 species
Solyc10g079530.2.1 Solyc10g079530 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Tin_g04556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e024850_P001 Zm00001e024850 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e036342_P001 Zm00001e036342 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e041187_P001 Zm00001e041187 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 32 439
No external refs found!