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  5. Solyc05g006320.4.1

Solyc05g006320.4.1 (Solyc05g006320)


Aliases : Solyc05g006320

Description : rRNA processing factor (IRP1)


Gene families : OG0002038 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002038_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g006320.4.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Adi_g052245 No alias rRNA processing factor *(IRP1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00271 No alias rRNA processing factor *(IRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z073900.1 Ceric.1Z073900 rRNA processing factor *(IRP1) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01020154001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os04g30910.1 LOC_Os04g30910 rRNA processing factor (IRP1) 0.02 OrthoFinder output from all 47 species
Pir_g27370 No alias rRNA processing factor *(IRP1) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12580 No alias rRNA processing factor *(IRP1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03965 No alias rRNA processing factor *(IRP1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR001660 SAM 356 407
No external refs found!